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    LOC4332802 large ribosomal subunit protein eL22z [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332802, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332802
    Gene description
    large ribosomal subunit protein eL22z
    Locus tag
    OSNPB_030343500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip108
    Expression
    Ubiquitous expression in flower buds (RPKM 128.7), flowers (RPKM 91.4) and 6 other tissues See more
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    Genomic context

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    See LOC4332802 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12853623..12855019, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12798178..12799758, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene U3 small nucleolar RNA-associated protein 14 Neighboring gene blue-light photoreceptor PHR2 Neighboring gene peter Pan-like protein Neighboring gene uncharacterized LOC4332804

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL22z
    Names
    60S ribosomal protein L22-2
    BRI1-KD interacting protein 108
    Os03g0343500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      12853623..12855019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775439.3 → XP_015630925.1  large ribosomal subunit protein eL22z

      UniProtKB/TrEMBL
      A2XGK2, A6N0Q9, Q0DRZ6, Q762A6
      Conserved Domains (1) summary
      pfam01776
      Location:24 → 124
      Ribosomal_L22e; Ribosomal L22e protein family
    Nucleotide Protein
    Heading Accession and Version

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