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    LOC9272324 glutathione synthetase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272324, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9272324
    Gene description
    glutathione synthetase, chloroplastic
    Locus tag
    OSNPB_120528400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsGS3
    Expression
    Ubiquitous expression in flower buds (RPKM 25.2), roots before flowering (RPKM 20.3) and 6 other tissues See more
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    Genomic context

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    See LOC9272324 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (21510254..21515003)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (20838395..20843236)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene AP-5 complex subunit mu Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene uncharacterized LOC107278045 Neighboring gene uncharacterized LOC136354847 Neighboring gene uncharacterized LOC107279678

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutathione binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutathione synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutathione synthetase, chloroplastic
    Names
    Os12g0528400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      21510254..21515003
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306632.1 → XP_066162729.1  glutathione synthetase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8BM87

    2. XM_015762575.3 → XP_015618061.1  glutathione synthetase, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A3G9EDT2, B8BM87
      Conserved Domains (1) summary
      PLN02977
      Location:18 → 475
      PLN02977; glutathione synthetase
    Nucleotide Protein
    Heading Accession and Version

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