LOC4330571 auxin-responsive protein IAA8-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4330571
Gene description: auxin-responsive protein IAA8-like
Locus tag: OSNPB_020723400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: IAA8; OsJ_08196
Expression: Broad expression in flowers (RPKM 3.3), flower buds (RPKM 3.0) and 5 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (30556112..30557926)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (30064258..30066121)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: auxin-responsive protein IAA8

Names: Indoleacetic acid-induced protein 8; LOC_Os02g49160; P0685G12.16-1; P0685G12.16-2; putative aux/IAA protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001416867.1 → NP_001403796.1 auxin-responsive protein IAA8

Status: VALIDATED

Source sequence(s)

AK066518, AK108275, AP014958, CI203035, CI323212, CI334923, CI571056

UniProtKB/Swiss-Prot

Q0DY02, Q6Z5M0, Q6Z5M1

UniProtKB/TrEMBL

B8AHP0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089036.1 Reference ASM3414082v1 Primary Assembly

Range

30556112..30557926

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015768732.3 → XP_015624218.1 auxin-responsive protein IAA8 isoform X1

Conserved Domains (1) summary

pfam02309
Location:103 → 183

AUX_IAA; AUX/IAA family