LOC4339234 probable indole-3-acetic acid-amido synthetase GH3.4 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4339234
Gene description: probable indole-3-acetic acid-amido synthetase GH3.4
Locus tag: OSNPB_050500900
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: GH3.4; OsGH3-4; OsJ_19094
Expression: Biased expression in milk grains (RPKM 12.0), flowers (RPKM 9.7) and 1 other tissue See more
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Genomic context

Location:: chromosome: 5

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (24643554..24646086, complement)

Chromosome 5 - NC_029260.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

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Expression

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Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables acid-amino acid ligase activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable indole-3-acetic acid-amido synthetase GH3.4

Names: Auxin-responsive GH3-like protein 4; LOC_Os05g42150; OSJNBa0017K09.2

XP_015638110.1

EC 6.3.2.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420690.1 → NP_001407619.1 probable indole-3-acetic acid-amido synthetase GH3.4

Status: VALIDATED

Source sequence(s)

AK101932, AP014961, CI069554, CI147030, CI197924, CI303000

UniProtKB/Swiss-Prot

Q0DGZ2, Q60EJ6

UniProtKB/TrEMBL

A2Y678

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029260.1 Reference IRGSP-1.0 Primary Assembly

Range

24643554..24646086 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015782624.2 → XP_015638110.1 probable indole-3-acetic acid-amido synthetase GH3.4

UniProtKB/Swiss-Prot

Q60EJ6

Conserved Domains (1) summary

cl21606
Location:22 → 610

GH3; GH3 auxin-responsive promoter