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    LOC4341137 BTB/POZ domain-containing protein POB1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341137, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341137
    Gene description
    BTB/POZ domain-containing protein POB1
    Locus tag
    OSNPB_060507400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 23.4), leaves after flowering (RPKM 22.3) and 6 other tissues See more
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    Genomic context

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    See LOC4341137 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (18081035..18086707, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene prolamin PPROL 17D-like Neighboring gene BTB/POZ domain-containing protein POB1 Neighboring gene uncharacterized protein At5g41620 Neighboring gene probable methionine--tRNA ligase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to red light IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein POB1
    Names
    Os06g0507400
    P0561B08.19
    putative GAMYB-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18081035..18086707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788646.2 → XP_015644132.1  BTB/POZ domain-containing protein POB1

      UniProtKB/TrEMBL
      A0A5S6R9K8, B8B331, B9FTH8, Q0DBY3, Q5Z9M6
      Conserved Domains (3) summary
      smart00225
      Location:130 → 224
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:248 → 333
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:114 → 221
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version

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