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    LOC4351314 non-specific lipid-transfer protein 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351314, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351314
    Gene description
    non-specific lipid-transfer protein 4-like
    Locus tag
    OSNPB_120114500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 41.7), flowers (RPKM 29.5) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (746980..748098)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (723138..724238)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351312 Neighboring gene pentatricopeptide repeat-containing protein At4g18840 Neighboring gene non-specific lipid-transfer protein 3-like Neighboring gene non-specific lipid-transfer protein 2B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-specific lipid-transfer protein 4
    Names
    LOC_Os12g02290
    LTP 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423301.1 → NP_001410230.1  non-specific lipid-transfer protein 4 precursor

      Status: VALIDATED

      Source sequence(s)
      AK073466, AU108829, C27319
      UniProtKB/Swiss-Prot
      O65091, Q0IQL2, Q2QYL4
      UniProtKB/TrEMBL
      A0A8J8XTI0, A2ZHE8, A3CEC0, B7EM70

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      746980..748098
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65091.2 GenPept UniProtKB/Swiss-Prot:O65091

    Gene LinkOut

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