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    LOC4351479 protein TRAUCO [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351479, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351479
    Gene description
    protein TRAUCO
    Locus tag
    OSNPB_120143200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351479 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (2144030..2150167)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (2120769..2124323)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase RHC2A Neighboring gene uncharacterized LOC136354745 Neighboring gene uncharacterized LOC107279707 Neighboring gene ubiquitin-like protein 5 Neighboring gene uncharacterized LOC136354748 Neighboring gene structure-specific endonuclease subunit slx1 Neighboring gene suppressor of mec-8 and unc-52 protein homolog 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TRAUCO
    Names
    Os12g0143100
    Os12g0143200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      2144030..2150167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022227.2 → XP_025878012.1  protein TRAUCO

      UniProtKB/TrEMBL
      A0A8J8YDB8, B8BM07, B9GBU8, Q0IQ61, Q2QXT8
      Conserved Domains (1) summary
      cd12872
      Location:184 → 373
      SPRY_Ash2; SPRY domain in Ash2
    Nucleotide Protein
    Heading Accession and Version

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