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    LOC4327978 translation initiation factor IF3-1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327978, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327978
    Gene description
    translation initiation factor IF3-1, mitochondrial
    Locus tag
    OSNPB_020101100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1435_F07.2
    Expression
    Ubiquitous expression in flowers (RPKM 13.7), flower buds (RPKM 13.6) and 6 other tissues See more
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    Genomic context

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    See LOC4327978 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (65583..70969)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (59285..64709)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transcriptional regulator SUPERMAN Neighboring gene amino acid transporter AVT1C Neighboring gene GDSL esterase/lipase EXL3 Neighboring gene glycerate dehydrogenase Neighboring gene SKP1-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosome disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translation initiation factor IF3-1, mitochondrial
    Names
    B1370C05.12
    Os02g0101100
    translation initiation factor 3 (IF-3)-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      65583..70969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767097.3 → XP_015622583.1  translation initiation factor IF3-1, mitochondrial

      UniProtKB/TrEMBL
      B8AGU7, B9F1N3, Q6YU95, Q6ZFM0
      Conserved Domains (1) summary
      PRK00028
      Location:60 → 225
      infC; translation initiation factor IF-3; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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