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    LOC4348579 probable serine/threonine-protein kinase PBL3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348579, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4348579
    Gene description
    probable serine/threonine-protein kinase PBL3
    Locus tag
    OSNPB_100405100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 23.7), leaves after flowering (RPKM 18.6) and 6 other tissues See more
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    Genomic context

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    See LOC4348579 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13823477..13829535)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene sucrose transport protein SUT3-like Neighboring gene homeobox-leucine zipper protein HOX23-like Neighboring gene uncharacterized LOC4348580 Neighboring gene meiosis-specific protein PAIR3-like Neighboring gene ATP-dependent 6-phosphofructokinase 5, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase PBL3
    Names
    Os10g0405100
    protein kinase 2B, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13823477..13829535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758842.2 → XP_015614328.1  probable serine/threonine-protein kinase PBL3 isoform X1

      UniProtKB/TrEMBL
      A0A5S6RC32, A2Z735, Q0IXX6, Q7XEV8, Q93WA3
      Conserved Domains (1) summary
      cd14066
      Location:91 → 368
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_015758843.2 → XP_015614329.1  probable serine/threonine-protein kinase PBL3 isoform X2

      UniProtKB/TrEMBL
      A2Z735
      Conserved Domains (2) summary
      smart00219
      Location:91 → 362
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:91 → 365
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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