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    LOC4345446 protein Dr1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345446, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345446
    Gene description
    protein Dr1 homolog
    Locus tag
    OSNPB_080383700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 35.3), leaves after flowering (RPKM 30.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (18223230..18227646)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18087569..18091980)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative F-box/kelch-repeat protein At1g13200 Neighboring gene uncharacterized LOC136351583 Neighboring gene clavaminate synthase-like protein At3g21360 Neighboring gene probable transmembrane ascorbate ferrireductase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Dr1 homolog
    Names
    B1090H08.28
    Os08g0383700
    repressor protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      18223230..18227646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795422.2 → XP_015650908.1  protein Dr1 homolog

      UniProtKB/TrEMBL
      Q0J603, Q8W0W9
      Conserved Domains (1) summary
      cl23735
      Location:8 → 137
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    Nucleotide Protein
    Heading Accession and Version

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