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    LOC4344672 uncharacterized LOC4344672 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344672, updated on 31-May-2023

    Summary

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    Gene symbol
    LOC4344672
    Gene description
    uncharacterized LOC4344672
    Locus tag
    OSNPB_080152500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1349_D05.116
    Expression
    Ubiquitous expression in flowers (RPKM 7.5), flower buds (RPKM 7.2) and 6 other tissues See more
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    Genomic context

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    See LOC4344672 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3009620..3012538, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2-like Neighboring gene cytochrome P450 89A2 Neighboring gene protein ENHANCED DISEASE RESISTANCE 2-like Neighboring gene sphingoid long-chain bases kinase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344672
    Names
    Os08g0152500

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3009620..3012538 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795315.2 → XP_015650801.1  uncharacterized protein LOC4344672 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XC18, B8BAY5, B9FZ39, Q7EYH5
      Conserved Domains (1) summary
      pfam10167
      Location:22 → 125
      BORCS8; BLOC-1-related complex sub-unit 8

    2. XM_015795316.2 → XP_015650802.1  uncharacterized protein LOC4344672 isoform X2

      Conserved Domains (1) summary
      pfam10167
      Location:32 → 90
      NEP; uncharacterized conserved protein
    Nucleotide Protein
    Heading Accession and Version

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