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    LOC4340813 formin-binding protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340813, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340813
    Gene description
    formin-binding protein 4
    Locus tag
    OSNPB_060298400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0501G08.3
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.3), leaves after flowering (RPKM 14.2) and 6 other tissues See more
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    Genomic context

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    See LOC4340813 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11085815..11094219)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein CONSTANS-LIKE 9 Neighboring gene uncharacterized LOC112939356 Neighboring gene protein translocase subunit SecA Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    formin-binding protein 4
    Names
    Os06g0298400
    WW domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11085815..11094219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787931.2 → XP_015643417.1  formin-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      B9FSV3
      Conserved Domains (1) summary
      cd00201
      Location:175 → 203
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

    2. XM_015787932.2 → XP_015643418.1  formin-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KLZ1, B8B0V4, Q5ZA54
      Conserved Domains (2) summary
      cd00201
      Location:175 → 203
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
      pfam00397
      Location:828 → 858
      WW; WW domain

    3. XM_015787933.2 → XP_015643419.1  formin-binding protein 4 isoform X3

      UniProtKB/TrEMBL
      B9FSV3
      Conserved Domains (1) summary
      cd00201
      Location:9 → 37
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

    RNA

    1. XR_001546861.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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