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    LOC9270939 phospholipid-transporting ATPase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270939, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9270939
    Gene description
    phospholipid-transporting ATPase 2
    Locus tag
    OSNPB_050335401
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 62.3), roots after flowering (RPKM 53.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (15771039..15775985, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (15681645..15684509, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 22 Neighboring gene uncharacterized LOC136351272 Neighboring gene uncharacterized LOC136356565 Neighboring gene uncharacterized LOC4338455

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase 2
    Names
    Os05g0335401

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      15771039..15775985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784152.3 → XP_015639638.1  phospholipid-transporting ATPase 2

      UniProtKB/TrEMBL
      B9FNX8
      Conserved Domains (1) summary
      cl21460
      Location:1 → 102
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. XM_066310675.1 → XP_066166772.1  phospholipid-transporting ATPase 2

      UniProtKB/TrEMBL
      B9FNX8
    Nucleotide Protein
    Heading Accession and Version

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