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    LOC4335634 probable sodium/metabolite cotransporter BASS1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335634, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4335634
    Gene description
    probable sodium/metabolite cotransporter BASS1, chloroplastic
    Locus tag
    OSNPB_040381100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BASS1
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    Genomic context

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    See LOC4335634 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (19030360..19035508)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (18675935..18681078)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335632 Neighboring gene dynamin-related protein 3B Neighboring gene uncharacterized LOC4335635 Neighboring gene uncharacterized LOC136356352

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable sodium/metabolite cotransporter BASS1, chloroplastic
    Names
    Bile acid-sodium symporter family protein 1
    LOC_Os04g31210
    OSJNBa0072D21.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419252.1 → NP_001406181.1  probable sodium/metabolite cotransporter BASS1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK060452, AK121764, CI226062
      UniProtKB/Swiss-Prot
      A0A0P0W9L6, B7E506, Q7XVB3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      19030360..19035508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778207.3 → XP_015633693.1  probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0W9L6, B7E506, Q7XVB3
      UniProtKB/TrEMBL
      Q01LJ7
      Conserved Domains (1) summary
      COG0385
      Location:101 → 397
      YfeH; Predicted Na+-dependent transporter [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XVB3.2 GenPept UniProtKB/Swiss-Prot:Q7XVB3

    Gene LinkOut

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