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    LOC4332700 RGS1-HXK1-interacting protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332700, updated on 18-Aug-2023

    Summary

    Gene symbol
    LOC4332700
    Gene description
    RGS1-HXK1-interacting protein 1
    Locus tag
    OSNPB_030324800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 20.5), flowers (RPKM 18.2) and 6 other tissues See more
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    Genomic context

    See LOC4332700 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11808351..11813221, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA4 Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene E3 ubiquitin-protein ligase SIRP1-like Neighboring gene pyruvate kinase, cytosolic isozyme-like Neighboring gene uncharacterized protein DKFZp434B061-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    RGS1-HXK1-interacting protein 1
    Names
    Os03g0324800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11808351..11813221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772956.2XP_015628442.1  RGS1-HXK1-interacting protein 1

      UniProtKB/TrEMBL
      A0A8J8Y1X1, B8ANF7, B9F876, Q0DS93, Q10M34
      Conserved Domains (1) summary
      COG1579
      Location:82202
      COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]