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    LOC4327651 WRKY transcription factor SUSIBA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327651, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4327651
    Gene description
    WRKY transcription factor SUSIBA2
    Locus tag
    OSNPB_010584900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY5; WRKY77; P0712E02.9
    Expression
    Biased expression in leaves after flowering (RPKM 18.1), roots after flowering (RPKM 15.1) and 2 other tissues See more
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    Genomic context

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    See LOC4327651 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (23305814..23307035)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22731909..22733370)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324207 Neighboring gene uncharacterized LOC107279412 Neighboring gene uncharacterized LOC136354962 Neighboring gene glycerophosphocholine acyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway. Kim T, et al. Int J Mol Sci, 2019 Sep 9. PMID 31505875, Free PMC Article
    2. A salicylic acid-induced rice (Oryza sativa L.) transcription factor OsWRKY77 is involved in disease resistance of Arabidopsis thaliana. Lan A, et al. Plant Biol (Stuttg), 2013 May. PMID 23061987
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsWRKY5 is a positive regulator of leaf senescence that upregulates senescence-induced NAC, ABA biosynthesis, and chlorophyll degradation genes.
      Title: OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
    2. WRKY77 localises in the nucleus and is a transcriptional activator
      Title: A salicylic acid-induced rice (Oryza sativa L.) transcription factor OsWRKY77 is involved in disease resistance of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor SUSIBA2
    Names
    OSJNBb0024F06.22
    Os01g0584900
    WRKY transcription factor 28-like
    WRKY transcription factor 77

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      23305814..23307035
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779545.3 → XP_015635031.1  WRKY transcription factor SUSIBA2

      UniProtKB/TrEMBL
      A0A0P0V4L7, A0A8J8YD51, A2WRV6, A2ZUT3, Q94D50
      Conserved Domains (1) summary
      smart00774
      Location:136 → 193
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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