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    LOC4324118 uncharacterized LOC4324118 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324118, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324118
    Gene description
    uncharacterized LOC4324118
    Locus tag
    OSNPB_010687500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 15.3), flowers (RPKM 8.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28952102..28956059)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28363991..28367989)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324116 Neighboring gene acidic endochitinase Neighboring gene uncharacterized LOC4324119 Neighboring gene uncharacterized LOC4327935 Neighboring gene L-gulonolactone oxidase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methionyl-tRNA formyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in conversion of methionyl-tRNA to N-formyl-methionyl-tRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324118
    Names
    Met-tRNAi formyl transferase-like
    Os01g0687500
    P0519D04.22
    methionyl-tRNA formyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28952102..28956059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766892.3 → XP_015622378.1  uncharacterized protein LOC4324118

      UniProtKB/TrEMBL
      A0A0P0V6V5, B8A7N8, B9EYP2, Q5N7L5
      Conserved Domains (3) summary
      cd08646
      Location:33 → 247
      FMT_core_Met-tRNA-FMT_N; Methionyl-tRNA formyltransferase, N-terminal hydrolase domain
      PLN02285
      Location:32 → 358
      PLN02285; methionyl-tRNA formyltransferase
      pfam02911
      Location:250 → 352
      Formyl_trans_C; Formyl transferase, C-terminal domain

    RNA

    1. XR_001542692.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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