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    LOC4347068 pentatricopeptide repeat-containing protein At5g61400 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347068, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347068
    Gene description
    pentatricopeptide repeat-containing protein At5g61400
    Locus tag
    OSNPB_090417500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347068 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19349361..19353403)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14971318..14975378)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 12-like Neighboring gene bHLH transcription factor RHL1 Neighboring gene WRKY transcription factor WRKY76-like Neighboring gene WRKY transcription factor WRKY62-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g61400
    Names
    Os09g0417500
    P0014G10.38
    putative fertility restorer homologue A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      19349361..19353403
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755296.3 → XP_015610782.1  pentatricopeptide repeat-containing protein At5g61400

      UniProtKB/TrEMBL
      A0A0N7KQT3, A2Z1A2, Q6EPZ3
      Conserved Domains (2) summary
      sd00004
      Location:385 → 412
      PPR; PPR repeat [structural motif]
      cl25449
      Location:143 → 453
      PPR_2; PPR repeat family

    2. XM_015755295.3 → XP_015610781.1  pentatricopeptide repeat-containing protein At5g61400

      UniProtKB/TrEMBL
      A0A0N7KQT3, A2Z1A2, Q6EPZ3
      Conserved Domains (2) summary
      sd00004
      Location:385 → 412
      PPR; PPR repeat [structural motif]
      cl25449
      Location:143 → 453
      PPR_2; PPR repeat family

    3. XM_015755297.3 → XP_015610783.1  pentatricopeptide repeat-containing protein At5g61400

      UniProtKB/TrEMBL
      A0A0N7KQT3, A2Z1A2, Q6EPZ3
      Conserved Domains (2) summary
      sd00004
      Location:385 → 412
      PPR; PPR repeat [structural motif]
      cl25449
      Location:143 → 453
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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