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    LOC4334789 uncharacterized protein At4g15970 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334789, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4334789
    Gene description
    uncharacterized protein At4g15970
    Locus tag
    OSNPB_030849900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 19.0), flower buds (RPKM 11.1) and 3 other tissues See more
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    Genomic context

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    See LOC4334789 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35766935..35769002)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial Neighboring gene uncharacterized protein At4g15970 Neighboring gene oxidoreductase UcpA Neighboring gene CTD small phosphatase-like protein 2 Neighboring gene 4-hydroxyphenylacetaldehyde oxime monooxygenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein At4g15970
    Names
    Os03g0849900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35766935..35769002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773591.2 → XP_015629077.1  uncharacterized protein At4g15970

      UniProtKB/TrEMBL
      A0A0N7KIE2, A3APS3, Q852E2
      Conserved Domains (1) summary
      pfam03407
      Location:178 → 377
      Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    Nucleotide Protein
    Heading Accession and Version

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