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    LOC4342192 photosynthetic NDH subunit of lumenal location 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342192, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342192
    Gene description
    photosynthetic NDH subunit of lumenal location 3, chloroplastic
    Locus tag
    OSNPB_070105600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 241.5), flowers (RPKM 85.0) and 3 other tissues See more
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    Genomic context

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    See LOC4342192 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (306006..306999)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342190 Neighboring gene sulfated surface glycoprotein 185 Neighboring gene kinesin-like protein KIN-14N Neighboring gene uncharacterized LOC112939579

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthetic electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosynthetic NDH subunit of lumenal location 3, chloroplastic
    Names
    B1317D11.109
    Os07g0105600
    P0446F04.140
    P0617C02.114
    PsbQ domain protein family, putative-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421958.1 → NP_001408887.1  photosynthetic NDH subunit of lumenal location 3, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AP014963, CF279253, CF333227, CI149827
      UniProtKB/TrEMBL
      A2YHC5, Q0D961, Q8L472

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      306006..306999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789254.2 → XP_015644740.1  photosynthetic NDH subunit of lumenal location 3, chloroplastic

      UniProtKB/TrEMBL
      Q8L472
      Conserved Domains (1) summary
      pfam05757
      Location:22 → 221
      PsbQ; Oxygen evolving enhancer protein 3 (PsbQ)
    Nucleotide Protein
    Heading Accession and Version

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