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    LOC4332425 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332425, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332425
    Gene description
    trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1
    Locus tag
    OSNPB_030278200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 98.3), roots after flowering (RPKM 49.5) and 6 other tissues See more
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    Genomic context

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    See LOC4332425 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9495936..9499194)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9445278..9448703)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich repeat secretory protein 55 Neighboring gene UDP-glucuronic acid decarboxylase 6 Neighboring gene THO complex subunit 4A Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dTDP-glucose 4,6-dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-sugar metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1
    Names
    Os03g0278200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9495936..9499194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775287.3 → XP_015630773.1  trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 isoform X1

      Conserved Domains (3) summary
      PLN02778
      Location:383 → 675
      PLN02778; 3,5-epimerase/4-reductase
      cd05246
      Location:11 → 328
      dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
      PLN02260
      Location:5 → 679
      PLN02260; probable rhamnose biosynthetic enzyme

    2. XM_066308578.1 → XP_066164675.1  trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 isoform X2

    3. XM_066308579.1 → XP_066164676.1  trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 isoform X3

    4. XM_066308580.1 → XP_066164677.1  trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 isoform X3

    5. XM_015775289.2 → XP_015630775.1  trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 isoform X3

      UniProtKB/TrEMBL
      A0A0B4U1W1, A0A8J8XNF3, B8AL26, B9F7B9, Q0DT00, Q10N92
      Conserved Domains (1) summary
      PLN02260
      Location:1 → 675
      PLN02260; probable rhamnose biosynthetic enzyme

    6. XM_015775290.3 → XP_015630776.1  trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 isoform X3

      UniProtKB/TrEMBL
      A0A0B4U1W1, A0A8J8XNF3, B8AL26, B9F7B9, Q0DT00, Q10N92
      Conserved Domains (1) summary
      PLN02260
      Location:1 → 675
      PLN02260; probable rhamnose biosynthetic enzyme
    Nucleotide Protein
    Heading Accession and Version

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