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    LOC4324254 late embryogenesis abundant protein 14-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324254, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4324254
    Gene description
    late embryogenesis abundant protein 14-like
    Locus tag
    OSNPB_010705200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0692C11.3
    Expression
    Restricted expression toward mature seeds (RPKM 616.6) See more
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    Genomic context

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    See LOC4324254 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29233039..29234263, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein SOGA3-like Neighboring gene germin-like protein 1-2 Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 Neighboring gene uncharacterized LOC4324256

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Induction of chilling resistance by water stress, and cDNA sequence analysis and expression of water stress-regulated genes in rice. Takahashi R, et al. Plant Mol Biol, 1994 Oct. PMID 7948880
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    late embryogenesis abundant protein 14-like
    Names
    Os01g0705200
    P0684B02.22
    WSI18 protein induced by water stress

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001425712.1 → NP_001412641.1  late embryogenesis abundant protein 14-like

      Status: VALIDATED

      Source sequence(s)
      CA998010, CI044401, CI154088, CI307619
      UniProtKB/Swiss-Prot
      Q40709, Q94JF2
      UniProtKB/TrEMBL
      A0A1P8DDW2, A2WU85

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29233039..29234263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758002.2 → XP_015613488.1  late embryogenesis abundant protein 14-like

    Nucleotide Protein
    Heading Accession and Version

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