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    LOC4325596 subtilisin-like protease SBT2.2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325596, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4325596
    Gene description
    subtilisin-like protease SBT2.2
    Locus tag
    OSNPB_010769200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0665A11.6
    Expression
    Broad expression in flower buds (RPKM 6.9), flowers (RPKM 4.8) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33056530..33062121)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32450871..32456506)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein PAT1 homolog 1 Neighboring gene lipoyl synthase 1, chloroplastic-like Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT2.2
    Names
    B1143G03.30
    Os01g0769200
    putative meiotic serine proteinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33056530..33062121
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768640.3 → XP_015624126.1  subtilisin-like protease SBT2.2 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KDT8, A2WVH4, Q0JIZ3, Q94EF5
      Conserved Domains (5) summary
      cd04852
      Location:156 → 661
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:402 → 537
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:80 → 156
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:748 → 841
      fn3_6; Fibronectin type-III domain
      cl10459
      Location:552 → 705
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

    2. XM_066305238.1 → XP_066161335.1  subtilisin-like protease SBT2.2 isoform X2

      UniProtKB/TrEMBL
      A2WVH4
    Nucleotide Protein
    Heading Accession and Version

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