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    LOC4344327 myb-related protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344327, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344327
    Gene description
    myb-related protein 1
    Locus tag
    OSNPB_070685300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 4.1), leaves before flowering (RPKM 4.1) and 6 other tissues See more
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    Genomic context

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    See LOC4344327 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29091958..29094415, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene WUSCHEL-related homeobox 11-like Neighboring gene cyclic dof factor 2 Neighboring gene nuclear pore complex protein NUP214 Neighboring gene probable lysophospholipase BODYGUARD 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myb-related protein 1
    Names
    OSJNBa0060O17.35
    Os07g0685300
    transfactor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29091958..29094415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791085.2 → XP_015646571.1  myb-related protein 1 isoform X3

      UniProtKB/TrEMBL
      Q6Z4M5
      Conserved Domains (2) summary
      TIGR01557
      Location:52 → 108
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:155 → 201
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. XM_015791086.2 → XP_015646572.1  myb-related protein 1 isoform X4

      UniProtKB/TrEMBL
      Q6Z4M5
      Conserved Domains (2) summary
      TIGR01557
      Location:52 → 108
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:154 → 200
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    3. XM_015791087.2 → XP_015646573.1  myb-related protein 1 isoform X5

      UniProtKB/TrEMBL
      Q6Z4M5
      Conserved Domains (2) summary
      TIGR01557
      Location:46 → 102
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:150 → 196
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    4. XM_015791083.2 → XP_015646569.1  myb-related protein 1 isoform X1

      UniProtKB/TrEMBL
      Q6Z4M5
      Conserved Domains (2) summary
      TIGR01557
      Location:52 → 108
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:156 → 202
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    5. XM_015791084.2 → XP_015646570.1  myb-related protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XB57, B9FUY1, Q0D3I5, Q6Z4M5
      Conserved Domains (2) summary
      TIGR01557
      Location:52 → 108
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:155 → 201
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version

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