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    LOC4344355 importin subunit alpha-4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344355, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344355
    Gene description
    importin subunit alpha-4
    Locus tag
    OSNPB_070688300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1165_F02.112
    Expression
    Ubiquitous expression in roots after flowering (RPKM 8.2), leaves before flowering (RPKM 7.6) and 6 other tissues See more
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    Genomic context

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    See LOC4344355 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29247800..29251975, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g13040, mitochondrial Neighboring gene transcription factor JAMYB-like Neighboring gene nuclear poly(A) polymerase 3 Neighboring gene transcription factor bHLH149

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NLS-bearing protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    importin subunit alpha-1a-like; importin subunit alpha-4
    Names
    Os07g0688300
    putative importin alpha 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29247800..29251975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789267.2 → XP_015644753.1  importin subunit alpha-1a-like isoform X1

      UniProtKB/TrEMBL
      A2YQ46, A3BNL7
      Conserved Domains (3) summary
      COG5064
      Location:113 → 546
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:149 → 182
      ARM; armadillo repeat [structural motif]
      pfam01749
      Location:39 → 132
      IBB; Importin beta binding domain

    2. XM_015789268.2 → XP_015644754.1  importin subunit alpha-1a-like isoform X1

      UniProtKB/TrEMBL
      A2YQ46, A3BNL7
      Conserved Domains (3) summary
      COG5064
      Location:113 → 546
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:149 → 182
      ARM; armadillo repeat [structural motif]
      pfam01749
      Location:39 → 132
      IBB; Importin beta binding domain

    3. XM_015789269.2 → XP_015644755.1  importin subunit alpha-1a-like isoform X1

      UniProtKB/TrEMBL
      A2YQ46, A3BNL7
      Conserved Domains (3) summary
      COG5064
      Location:113 → 546
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:149 → 182
      ARM; armadillo repeat [structural motif]
      pfam01749
      Location:39 → 132
      IBB; Importin beta binding domain

    4. XM_015789266.2 → XP_015644752.1  importin subunit alpha-1a-like isoform X1

      UniProtKB/TrEMBL
      A2YQ46, A3BNL7
      Conserved Domains (3) summary
      COG5064
      Location:113 → 546
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:149 → 182
      ARM; armadillo repeat [structural motif]
      pfam01749
      Location:39 → 132
      IBB; Importin beta binding domain

    5. XM_015789271.2 → XP_015644757.1  importin subunit alpha-4 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XAB8, B7EER5, Q0D3F8, Q8H5F4
      Conserved Domains (2) summary
      COG5064
      Location:1 → 431
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:34 → 67
      ARM; armadillo repeat [structural motif]

    6. XM_015789265.2 → XP_015644751.1  importin subunit alpha-1a-like isoform X1

      UniProtKB/TrEMBL
      A2YQ46, A3BNL7
      Conserved Domains (3) summary
      COG5064
      Location:113 → 546
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:149 → 182
      ARM; armadillo repeat [structural motif]
      pfam01749
      Location:39 → 132
      IBB; Importin beta binding domain

    7. XM_015789270.2 → XP_015644756.1  importin subunit alpha-4 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XAB8, B7EER5, Q0D3F8, Q8H5F4
      Conserved Domains (2) summary
      COG5064
      Location:1 → 431
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:34 → 67
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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