U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4349207 probable glutathione S-transferase GSTU6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349207, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4349207
    Gene description
    probable glutathione S-transferase GSTU6
    Locus tag
    OSNPB_100530900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GSTU6
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4349207 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20633321..20634945)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene probable glutathione S-transferase GSTU6 Neighboring gene probable glutathione S-transferase GSTU6 Neighboring gene probable glutathione S-transferase GSTU6 Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Organisation and structural evolution of the rice glutathione S-transferase gene family. Soranzo N, et al. Mol Genet Genomics, 2004 Jun. PMID 15069639
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable glutathione S-transferase GSTU6
    Names
    28 kDa cold-induced protein
    LOC_Os10g38740
    OSJNBb0038A07.2
    putative glutathione S-transferase OsGSTU6
    XP_015614356.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404053.1 → NP_001390982.1  probable glutathione S-transferase GSTU6

      Status: VALIDATED

      Source sequence(s)
      CI031991, CI261207, CI639714
      UniProtKB/Swiss-Prot
      B7E411, Q06398, Q0IW60, Q9FUE6
      UniProtKB/TrEMBL
      A2Z9M2, A3C6Q9

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20633321..20634945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758870.2 → XP_015614356.1  probable glutathione S-transferase GSTU6

      UniProtKB/Swiss-Prot
      Q06398
      Conserved Domains (2) summary
      cd03185
      Location:95 → 223
      GST_C_Tau; C-terminal, alpha helical domain of Class Tau Glutathione S-transferases
      cd03058
      Location:7 → 80
      GST_N_Tau; GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q06398.2 GenPept UniProtKB/Swiss-Prot:Q06398

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials