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    LOC4344633 probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344633, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344633
    Gene description
    probable NAD(P)H dehydrogenase (quinone) FQR1-like 1
    Locus tag
    OSNPB_080139200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_D01.19
    Expression
    Broad expression in flower buds (RPKM 97.4), flowers (RPKM 78.5) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2195142..2197040, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2182767..2184840, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene multiple organellar RNA editing factor 9, chloroplastic Neighboring gene uncharacterized LOC136351386 Neighboring gene U-box domain-containing protein 8 Neighboring gene uncharacterized LOC107276547

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD(P)H dehydrogenase (quinone) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable NAD(P)H dehydrogenase (quinone) FQR1-like 1
    Names
    Os08g0139200
    putative quinone-oxidoreductase QR2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2195142..2197040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795266.3 → XP_015650752.1  probable NAD(P)H dehydrogenase (quinone) FQR1-like 1

      UniProtKB/TrEMBL
      A0A0P0XBH3, B8BAM3, B9FZ00, Q6ZKI0
      Conserved Domains (1) summary
      cl00438
      Location:3 → 201
      FMN_red; NADPH-dependent FMN reductase
    Nucleotide Protein
    Heading Accession and Version

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