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    LOC4350473 serine carboxypeptidase-like 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350473, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4350473
    Gene description
    serine carboxypeptidase-like 7
    Locus tag
    OSNPB_110461000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 4.3), flower buds (RPKM 2.5) and 4 other tissues See more
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    Genomic context

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    See LOC4350473 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (17563507..17595193)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (15706650..15748225)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 2 Neighboring gene uncharacterized LOC107276801 Neighboring gene anthocyanidin-3-O-glucoside rhamnosyltransferase-like Neighboring gene uncharacterized LOC112936987

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in secondary metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine carboxypeptidase-like 13; serine carboxypeptidase-like 18; serine carboxypeptidase-like 7
    Names
    Os11g0461000
    Os11g0461200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      17563507..17595193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305336.1 → XP_066161433.1  serine carboxypeptidase-like 7 isoform X4

      UniProtKB/TrEMBL
      A0A0P0Y2H0

    2. XM_015760178.3 → XP_015615664.1  serine carboxypeptidase-like 13 isoform X3

      Conserved Domains (1) summary
      pfam00450
      Location:56 → 490
      Peptidase_S10; Serine carboxypeptidase

    3. XM_015760177.3 → XP_015615663.1  serine carboxypeptidase-like 7 isoform X2

      Conserved Domains (1) summary
      pfam00450
      Location:56 → 496
      Peptidase_S10; Serine carboxypeptidase

    4. XM_015760176.3 → XP_015615662.1  serine carboxypeptidase-like 7 isoform X1

      Conserved Domains (1) summary
      pfam00450
      Location:56 → 517
      Peptidase_S10; Serine carboxypeptidase

    5. XM_066305337.1 → XP_066161434.1  serine carboxypeptidase-like 7 isoform X5

    6. XM_066305339.1 → XP_066161436.1  serine carboxypeptidase-like 18 isoform X7

    7. XM_066305338.1 → XP_066161435.1  serine carboxypeptidase-like 7 isoform X6

    Nucleotide Protein
    Heading Accession and Version

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