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    LOC4328077 probable metal-nicotianamine transporter YSL7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328077, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4328077
    Gene description
    probable metal-nicotianamine transporter YSL7
    Locus tag
    OSNPB_020116300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YSL7; osysl7; OsJ_004978; OJ1442_E05.16
    Expression
    Biased expression in flower buds (RPKM 291.5) and flowers (RPKM 85.4) See more
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    Genomic context

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    See LOC4328077 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (860054..864884)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein BIP1-like Neighboring gene transcription factor IIIA Neighboring gene pentatricopeptide repeat-containing protein At2g22410, mitochondrial Neighboring gene probable metal-nicotianamine transporter YSL8 Neighboring gene dehydrogenase/reductase SDR family member FEY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable metal-nicotianamine transporter YSL7
    Names
    LOC_Os02g02450
    Protein YELLOW STRIPE LIKE 7
    putative iron-phytosiderophore transporter protein yellow stripe 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401750.1 → NP_001388679.1  probable metal-nicotianamine transporter YSL7

      Status: VALIDATED

      Source sequence(s)
      AB190917, CI271493, CI596951
      UniProtKB/Swiss-Prot
      Q25CH9, Q6ZGM7
      UniProtKB/TrEMBL
      A0A2H4MZR2, A2X040

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      860054..864884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768057.2 → XP_015623543.1  probable metal-nicotianamine transporter YSL7

      UniProtKB/Swiss-Prot
      Q25CH9, Q6ZGM7
      UniProtKB/TrEMBL
      A0A2H4MZR2, A2X040
      Conserved Domains (1) summary
      pfam03169
      Location:29 → 650
      OPT; OPT oligopeptide transporter protein

    2. XM_026023131.1 → XP_025878916.1  probable metal-nicotianamine transporter YSL7

      UniProtKB/Swiss-Prot
      Q25CH9, Q6ZGM7
      UniProtKB/TrEMBL
      A0A2H4MZR2, A2X040
      Conserved Domains (1) summary
      pfam03169
      Location:29 → 650
      OPT; OPT oligopeptide transporter protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZGM7.1 GenPept UniProtKB/Swiss-Prot:Q6ZGM7

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