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    LOC4336877 putative protein Brevis radix-like 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336877, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4336877
    Gene description
    putative protein Brevis radix-like 3
    Locus tag
    OSNPB_040600500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 3.8), flower buds (RPKM 1.6) and 2 other tissues See more
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    Genomic context

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    See LOC4336877 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30297858..30305607, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene ubiquinol oxidase 1b, mitochondrial-like Neighboring gene uncharacterized LOC4336876 Neighboring gene GPCR-type G protein COLD1-like Neighboring gene growth-regulating factor 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative protein Brevis radix-like 3
    Names
    Os04g0600500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30297858..30305607 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779062.2 → XP_015634548.1  putative protein Brevis radix-like 3

      UniProtKB/TrEMBL
      B8ATM8
      Conserved Domains (2) summary
      pfam08381
      Location:157 → 212
      BRX; Transcription factor regulating root and shoot growth via Pin3
      pfam13713
      Location:18 → 49
      BRX_N; Transcription factor BRX N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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