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    LOC4351305 stress response protein nst1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351305, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4351305
    Gene description
    stress response protein nst1
    Locus tag
    OSNPB_120112600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 21.2), flowers (RPKM 20.4) and 6 other tissues See more
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    Genomic context

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    See LOC4351305 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (645296..651157)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene homeobox protein Nkx-6.1 Neighboring gene phosphoglucan phosphatase LSF2, chloroplastic Neighboring gene uncharacterized LOC4351306 Neighboring gene uncharacterized LOC107278454

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    stress response protein nst1
    Names
    Os12g0112600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      645296..651157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763902.2 → XP_015619388.1  stress response protein nst1

      UniProtKB/TrEMBL
      B8BP09, Q0IQM1, Q2QYN0
      Conserved Domains (1) summary
      PTZ00121
      Location:214 → 346
      PTZ00121; MAEBL; Provisional
    Nucleotide Protein
    Heading Accession and Version

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