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    LOC4343797 probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343797, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343797
    Gene description
    probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
    Locus tag
    OSNPB_070597100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1579_C03.5
    Expression
    Ubiquitous expression in mature seeds (RPKM 36.9), roots before flowering (RPKM 30.5) and 6 other tissues See more
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    Genomic context

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    See LOC4343797 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24565898..24570689)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24341149..24345971)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 3 Neighboring gene eukaryotic translation initiation factor 5A Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360 Neighboring gene uncharacterized LOC9266470

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in glycolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
    Names
    Os07g0597100
    P0453E05.123

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24565898..24570689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792407.3 → XP_015647893.1  probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410

      UniProtKB/TrEMBL
      A2YNC3
      Conserved Domains (2) summary
      COG3268
      Location:14 → 449
      COG3268; Uncharacterized conserved protein, related to short-chain dehydrogenases [Function unknown]
      cl21454
      Location:17 → 87
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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