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    LOC4349511 CSC1-like protein At1g32090 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349511, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4349511
    Gene description
    CSC1-like protein At1g32090
    Locus tag
    OSNPB_100579100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 21.2), flowers (RPKM 15.9) and 5 other tissues See more
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    Genomic context

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    See LOC4349511 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23088101..23093415, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene choline-phosphate cytidylyltransferase 2 Neighboring gene 4-coumarate--CoA ligase-like 2 Neighboring gene D-xylose-proton symporter-like 2 Neighboring gene probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CSC1-like protein At1g32090
    Names
    Os10g0579100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23088101..23093415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759320.1 → XP_015614806.1  CSC1-like protein At1g32090

      UniProtKB/TrEMBL
      A0A097NUR4, A0A5S6RB24, A2ZAL4, Q0IVC4, Q7XBT3, Q9FRP8
      Conserved Domains (2) summary
      COG5594
      Location:10 → 711
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:368 → 639
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
    Nucleotide Protein
    Heading Accession and Version

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