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    LOC4331583 E3 ubiquitin-protein ligase WAV3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331583, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4331583
    Gene description
    E3 ubiquitin-protein ligase WAV3
    Locus tag
    OSNPB_030142500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 14.2), roots before flowering (RPKM 13.6) and 5 other tissues See more
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    Genomic context

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    See LOC4331583 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2345201..2350007)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2336768..2341592)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331579 Neighboring gene uncharacterized LOC9266937 Neighboring gene transcription factor WER Neighboring gene ABC transporter C family member 13-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase WAV3
    Names
    Os03g0142500
    putative zinc finger family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2345201..2350007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772326.3 → XP_015627812.1  E3 ubiquitin-protein ligase WAV3 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XFU2, A3ADZ7, B8AMW3, Q0DV92, Q10RY0
      Conserved Domains (3) summary
      cd01466
      Location:246 → 414
      vWA_C3HC4_type; VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b ...
      cd16448
      Location:75 → 118
      RING-H2; H2 subclass of RING (RING-H2) finger and its variants
      pfam14624
      Location:589 → 662
      Vwaint; VWA / Hh protein intein-like

    2. XM_066308696.1 → XP_066164793.1  E3 ubiquitin-protein ligase WAV3 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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