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    LOC4347332 dicarboxylate transporter 2.1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347332, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347332
    Gene description
    dicarboxylate transporter 2.1, chloroplastic
    Locus tag
    OSNPB_090469950
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1595_D08.16
    Expression
    Broad expression in leaves before flowering (RPKM 23.5), flower buds (RPKM 23.0) and 5 other tissues See more
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    Genomic context

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    See LOC4347332 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22264999..22268818)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17881775..17885669)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene isoamylase 3, chloroplastic Neighboring gene uncharacterized LOC4347331 Neighboring gene homeobox-leucine zipper protein HOX4-like Neighboring gene uncharacterized LOC4347334

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dicarboxylate transporter 2.1, chloroplastic
    Names
    Os09g0469950
    Os09g0470000
    P0676H02.34
    putative plastidic general dicarboxylate transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22264999..22268818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795817.3 → XP_015651303.1  dicarboxylate transporter 2.1, chloroplastic

      UniProtKB/TrEMBL
      A2Z282, Q6K4A2
      Conserved Domains (1) summary
      cl21473
      Location:81 → 549
      ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...
    Nucleotide Protein
    Heading Accession and Version

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