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    LOC4326742 reticulon-like protein B1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326742, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4326742
    Gene description
    reticulon-like protein B1
    Locus tag
    OSNPB_010226300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 44.8), flower buds (RPKM 43.6) and 5 other tissues See more
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    Genomic context

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    See LOC4326742 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6967617..6970152)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein Lea14-A Neighboring gene probable membrane-associated kinase regulator 2 Neighboring gene uncharacterized LOC4326743 Neighboring gene U11/U12 small nuclear ribonucleoprotein 59 kDa protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    reticulon-like protein B1
    Names
    Os01g0226300
    P0443E07.20
    P0492F05.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6967617..6970152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760730.2 → XP_015616216.1  reticulon-like protein B1

      UniProtKB/TrEMBL
      A2WMA1, A2ZQV9, Q9AWY7
      Conserved Domains (1) summary
      pfam02453
      Location:94 → 250
      Reticulon
    Nucleotide Protein
    Heading Accession and Version

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