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    LOC4331890 homeobox-leucine zipper protein HOX13-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331890, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331890
    Gene description
    homeobox-leucine zipper protein HOX13-like
    Locus tag
    OSNPB_030188900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Hox13; OsHox13; OJ1217B09.11
    Expression
    Broad expression in roots before flowering (RPKM 17.3), flowers (RPKM 15.4) and 5 other tissues See more
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    Genomic context

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    See LOC4331890 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4664330..4666218)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4652919..4654782)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH96 Neighboring gene arabinogalactan protein 1-like Neighboring gene uncharacterized LOC4331891 Neighboring gene WEB family protein At5g16730, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein HOX13
    Names
    HD-ZIP protein HOX13
    Homeodomain transcription factor HOX13
    LOC_Os03g08960

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402067.1 → NP_001388996.1  homeobox-leucine zipper protein HOX13 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK101522, CI222005, CI770387
      UniProtKB/Swiss-Prot
      B7ERV3, Q10QP3, Q6Q7E0, Q8H7N5
      UniProtKB/TrEMBL
      A0A0P0VU00

    2. NM_001402068.1 → NP_001388997.1  homeobox-leucine zipper protein HOX13 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK101522, AP014959, CI222005, CI770387
      UniProtKB/TrEMBL
      A0A0P0VU00

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4664330..4666218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772800.3 → XP_015628286.1  homeobox-leucine zipper protein HOX13 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VU00
      Conserved Domains (2) summary
      pfam00046
      Location:49 → 95
      Homeobox; Homeobox domain
      pfam02183
      Location:97 → 139
      HALZ; Homeobox associated leucine zipper
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10QP3.1 GenPept UniProtKB/Swiss-Prot:Q10QP3

    Gene LinkOut

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