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    LOC4336871 clathrin interactor EPSIN 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336871, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336871
    Gene description
    clathrin interactor EPSIN 1
    Locus tag
    OSNPB_040599900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    enth1
    Expression
    Ubiquitous expression in flowers (RPKM 68.7), flower buds (RPKM 48.7) and 6 other tissues See more
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    Genomic context

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    See LOC4336871 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30271211..30276254)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene P-loop guanosine triphosphatase YjiA Neighboring gene cell division cycle 20.2, cofactor of APC complex Neighboring gene myb family transcription factor PHL11 Neighboring gene uncharacterized LOC4336873 Neighboring gene ubiquinol oxidase 1a, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clathrin interactor EPSIN 1
    Names
    Os04g0599900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30271211..30276254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779921.2 → XP_015635407.1  clathrin interactor EPSIN 1

      UniProtKB/TrEMBL
      B8ATM5, B9FCA6, Q01HU7, Q7XTR7
      Conserved Domains (2) summary
      PLN03131
      Location:154 → 558
      PLN03131; hypothetical protein; Provisional
      pfam01417
      Location:27 → 148
      ENTH; ENTH domain
    Nucleotide Protein
    Heading Accession and Version

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