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    LOC4323963 transcription factor MYBS1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323963, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323963
    Gene description
    transcription factor MYBS1-like
    Locus tag
    OSNPB_010524500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MYBS1; OsMYBS1; OJ1005_B10.31
    Expression
    Broad expression in leaves before flowering (RPKM 7.0), roots after flowering (RPKM 5.7) and 5 other tissues See more
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    Genomic context

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    See LOC4323963 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (19321853..19323406)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (18755217..18756909)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280865 Neighboring gene uncharacterized LOC4323962 Neighboring gene uncharacterized LOC4323930 Neighboring gene uncharacterized LOC136354899

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression. Lu CA, et al. Plant Cell, 2002 Aug. PMID 12172034, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtMYBS1 negatively regulates heat tolerance by directly repressing the expression of MAX1 required for strigolactone biosynthesis in Arabidopsis.
      Title: AtMYBS1 negatively regulates heat tolerance by directly repressing the expression of MAX1 required for strigolactone biosynthesis in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYBS1
    Names
    B1249E06.22
    OSNPB_010524500
    Syringolide-induced protein 1-3-1B
    myb-related protein S1
    putative syringolide-induced protein 1-3-1B
    syringolide-induced protein 1-3-1B-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428033.1 → NP_001414962.1  transcription factor MYBS1

      Status: VALIDATED

      Source sequence(s)
      AK068565, AP014957, AY151042, CI690864
      UniProtKB/Swiss-Prot
      B8A9B2, Q8LH59
      UniProtKB/TrEMBL
      Q0JM93

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      19321853..19323406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LH59.1 GenPept UniProtKB/Swiss-Prot:Q8LH59

    Gene LinkOut

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    Research Materials