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    LOC4324879 TVP38/TMEM64 family membrane protein slr0305 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324879, updated on 18-Aug-2023

    Summary

    Gene symbol
    LOC4324879
    Gene description
    TVP38/TMEM64 family membrane protein slr0305
    Locus tag
    OSNPB_010884900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0408G07.3; P0408G07.4
    Expression
    Broad expression in leaves before flowering (RPKM 67.1), roots after flowering (RPKM 49.2) and 6 other tissues See more
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    Genomic context

    See LOC4324879 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38437149..38440462, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene uncharacterized LOC4324878 Neighboring gene pentatricopeptide repeat-containing protein At2g03880, mitochondrial Neighboring gene uncharacterized LOC112937606 Neighboring gene cytochrome c-like Neighboring gene uncharacterized LOC4324881

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4324879
    Names
    Os01g0884900

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      38437149..38440462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766927.2XP_015622413.1  uncharacterized protein LOC4324879

      UniProtKB/TrEMBL
      A2WXP4, A3A0A6
      Conserved Domains (1) summary
      COG0398
      Location:142335
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]