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    LOC4348540 GDSL esterase/lipase At5g45910 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348540, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4348540
    Gene description
    GDSL esterase/lipase At5g45910
    Locus tag
    OSNPB_100393800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 3.8), roots before flowering (RPKM 2.4) and 2 other tissues See more
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    Genomic context

    See LOC4348540 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (13783196..13785115)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13131438..13133358)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene signal peptide peptidase-like 1 Neighboring gene GDSL esterase/lipase At1g28590 Neighboring gene GDSL esterase/lipase At1g28570-like Neighboring gene shewanella-like protein phosphatase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    GDSL esterase/lipase At5g45910; acetylajmalan esterase
    Names
    Os10g0393800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      13783196..13785115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757757.3XP_015613243.1  GDSL esterase/lipase At5g45910 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XTQ4, A2Z6W6, Q0IXX1, Q7G7C9
      Conserved Domains (1) summary
      cd01837
      Location:32370
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    2. XM_015757758.3XP_015613244.1  acetylajmalan esterase isoform X2

      Conserved Domains (1) summary
      cl01053
      Location:32211
      SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...