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    LOC4351385 uncharacterized LOC4351385 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351385, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351385
    Gene description
    uncharacterized LOC4351385
    Locus tag
    OSNPB_120126200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 11.6), flowers (RPKM 6.9) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1290165..1293482)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1265803..1269164)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein Os11g0197600-like Neighboring gene GDSL esterase/lipase At1g71250 Neighboring gene AP2-like ethylene-responsive transcription factor At1g79700 Neighboring gene uncharacterized LOC4351387

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351385
    Names
    ELMO domain-containing protein C
    Os12g0126200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1290165..1293482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021868.2 → XP_025877653.1  uncharacterized protein LOC4351385

      UniProtKB/TrEMBL
      A0A8J8YMT5, B8BIU9, B8BLU2, B9GBN2, Q0IQE8, Q2QYA8, Q2RB17
      Conserved Domains (1) summary
      pfam04727
      Location:124 → 290
      ELMO_CED12; ELMO/CED-12 family
    Nucleotide Protein
    Heading Accession and Version

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