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    LOC4336883 V-type proton ATPase subunit G1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336883, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336883
    Gene description
    V-type proton ATPase subunit G1
    Locus tag
    OSNPB_040601700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 186.8), flowers (RPKM 178.7) and 6 other tissues See more
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    Genomic context

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    See LOC4336883 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30374698..30377140, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336881 Neighboring gene uncharacterized LOC4336882 Neighboring gene proline-rich protein 12 Neighboring gene serine/arginine repetitive matrix protein 1 Neighboring gene white stripe leaf/panicle1 Neighboring gene thylakoid lumenal 29 kDa protein, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit G1
    Names
    Os04g0601700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30374698..30377140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780984.2 → XP_015636470.1  V-type proton ATPase subunit G1

      UniProtKB/TrEMBL
      A2XX62, A3AX36, Q01HT5, Q7FAM9, Q7FAS6
      Conserved Domains (1) summary
      pfam03179
      Location:5 → 109
      V-ATPase_G; Vacuolar (H+)-ATPase G subunit

    2. XM_015780983.2 → XP_015636469.1  V-type proton ATPase subunit G1

      UniProtKB/TrEMBL
      A2XX62, A3AX36, Q01HT5, Q7FAM9, Q7FAS6
      Conserved Domains (1) summary
      pfam03179
      Location:5 → 109
      V-ATPase_G; Vacuolar (H+)-ATPase G subunit
    Nucleotide Protein
    Heading Accession and Version

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