LOC4335090 syn-copalyl diphosphate synthase-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4335090
Gene description: syn-copalyl diphosphate synthase-like
Locus tag: OSNPB_040178300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: CPS4; CYC1; OsCPS4; OsCyc1; OsCPSsyn
Expression: Biased expression in leaves after flowering (RPKM 73.8), roots before flowering (RPKM 66.8) and 3 other tissues See more
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Genomic context

Location:: chromosome: 4

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	4	NC_089038.1 (5410667..5419034)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	4	NC_029259.1 (5318061..5326426)

Chromosome 4 - NC_089038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

presence of two ent-CDP synthase isoforms in rice, one that participates in the biosynthesis of gibberelins and a second that is involved in the biosynthesis of phytoalexins. [OsCyc1][OsCyc2]
Title: Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis.
OsCPS4 (locus Os04g0178300) encodes a syn-copalyl diphosphate synthase responsible for momilactones and oryzalexin S biosynthesis.
Title: Reverse-genetic approach to verify physiological roles of rice phytoalexins: characterization of a knockdown mutant of OsCPS4 phytoalexin biosynthetic gene in rice.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables magnesium ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables terpene synthase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in gibberellin biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: syn-copalyl diphosphate synthase, chloroplastic

Names: LOC_Os04g09900; OSJNBa0096F01.12; Syn-CPP synthase; syn-CDP synthase; syn-copalyl diphosphate synthase

NP_001389265.1

EC 5.5.1.14

NP_001389266.1

EC 5.5.1.14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.