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    LOC4330565 ADP-ribosylation factor GTPase-activating protein AGD12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330565, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330565
    Gene description
    ADP-ribosylation factor GTPase-activating protein AGD12
    Locus tag
    OSNPB_020722500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 20.3), flower buds (RPKM 20.0) and 6 other tissues See more
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    Genomic context

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    See LOC4330565 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29998301..30002808, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 12 Neighboring gene probable amino acid permease 7 Neighboring gene uncharacterized LOC107278234 Neighboring gene KH domain-containing protein At5g56140

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs. Norton GJ, et al. Genomics, 2008 Nov. PMID 18755262
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor GTPase-activating protein AGD12
    Names
    Os02g0722500
    P0654B04.31
    putative zinc finger and C2 domain protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29998301..30002808 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771363.2 → XP_015626849.1  ADP-ribosylation factor GTPase-activating protein AGD12

      UniProtKB/TrEMBL
      B8AHN7, B9F2F7, Q0DY07, Q6Z653
      Conserved Domains (2) summary
      cd08204
      Location:23 → 129
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl14603
      Location:176 → 320
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

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