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    LOC4330982 protein TIC 55, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330982, updated on 2-May-2024

    Summary

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    Gene symbol
    LOC4330982
    Gene description
    protein TIC 55, chloroplastic
    Locus tag
    OSNPB_020792800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1249_F12.25
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    Genomic context

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    See LOC4330982 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33688587..33690467)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275634 Neighboring gene uncharacterized LOC9272709 Neighboring gene probable serine incorporator Neighboring gene zinc finger CCCH domain-containing protein 18-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chlorophyllide a oxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIC 55, chloroplastic
    Names
    Os02g0792800
    P0700F06.13
    putative Rieske iron-sulfur protein Tic55

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33688587..33690467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772124.2 → XP_015627610.1  protein TIC 55, chloroplastic

      UniProtKB/TrEMBL
      A2XAH0, A3AC69, Q6K689
      Conserved Domains (2) summary
      PLN02518
      Location:69 → 427
      PLN02518; pheophorbide a oxygenase
      cd04338
      Location:72 → 205
      Rieske_RO_Alpha_Tic55; Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to ...
    Nucleotide Protein
    Heading Accession and Version

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