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    LOC9270576 uncharacterized LOC9270576 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270576, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC9270576
    Gene description
    uncharacterized LOC9270576
    Locus tag
    OSNPB_030229600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 53.4), roots after flowering (RPKM 49.1) and 6 other tissues See more
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    Genomic context

    See LOC9270576 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6920270..6923846, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6871799..6875445, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein DETOXIFICATION 48 Neighboring gene uncharacterized LOC136355770 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene probable inactive poly [ADP-ribose] polymerase SRO2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC9270576
    Names
    Os03g0229600
    maf-like protein DDB_G0281937

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6920270..6923846 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772424.2XP_015627910.1  uncharacterized protein LOC9270576

      UniProtKB/TrEMBL
      B8AJL7, B9F6L8, Q10PL9
      Conserved Domains (1) summary
      pfam02545
      Location:9204
      Maf; Maf-like protein