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    LOC4330055 uncharacterized protein At2g24330 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330055, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330055
    Gene description
    uncharacterized protein At2g24330
    Locus tag
    OSNPB_020631000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1250G12.7
    Expression
    Ubiquitous expression in roots before flowering (RPKM 44.3), flowers (RPKM 24.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25717963..25722750)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25231650..25236464)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene gibberellin 2-beta-dioxygenase 6-like Neighboring gene uncharacterized LOC112937965 Neighboring gene photosynthetic NDH subunit of lumenal location 3, chloroplastic Neighboring gene uncharacterized LOC4330057

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum tubular network organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum tubular network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein At2g24330
    Names
    Os02g0631000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25717963..25722750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771165.3 → XP_015626651.1  uncharacterized protein At2g24330

      UniProtKB/TrEMBL
      B8AFR7, B9F177, Q6H475
      Conserved Domains (1) summary
      pfam10058
      Location:279 → 329
      zinc_ribbon_10; Predicted integral membrane zinc-ribbon metal-binding protein
    Nucleotide Protein
    Heading Accession and Version

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