LOC4332508 protein trichome birefringence-like 28 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4332508
Gene description: protein trichome birefringence-like 28
Locus tag: OSNPB_030291800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: TBL15; XOAT6; OsTBL15
Expression: Biased expression in flowers (RPKM 109.4), flower buds (RPKM 23.0) and 1 other tissue See more
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Genomic context

Location:: chromosome: 3

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (10147982..10153109)

Chromosome 3 - NC_029258.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables O-acetyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein trichome birefringence-like 28; xylan O-acetyltransferase 6

Names: LOC_Os03g18140; Os03g0291800; Protein trichome birefringence-like 15

XP_015632171.1

EC 2.3.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417578.1 → NP_001404507.1 xylan O-acetyltransferase 6

Status: VALIDATED

Source sequence(s)

CB659122, CB684392, CF333397, MH037020

UniProtKB/Swiss-Prot

Q0DSS4, Q10MX2

UniProtKB/TrEMBL

A2XFH5, B9F7S4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029258.1 Reference IRGSP-1.0 Primary Assembly

Range

10147982..10153109

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015776685.2 → XP_015632171.1 protein trichome birefringence-like 28

UniProtKB/TrEMBL

Q10MX2

Conserved Domains (2) summary

pfam13839
Location:255 → 548

PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

pfam14416
Location:200 → 254

PMR5N; PMR5 N terminal Domain