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    LOC4351178 uncharacterized LOC4351178 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351178, updated on 2-Mar-2021

    Summary

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    Gene symbol
    LOC4351178
    Gene description
    uncharacterized LOC4351178
    Locus tag
    OSNPB_110696600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 18.5), roots before flowering (RPKM 13.8) and 6 other tissues See more
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    Genomic context

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    See LOC4351178 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28496664..28499996)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene ATP-citrate synthase alpha chain protein 2-like Neighboring gene probable beta-D-xylosidase 2 Neighboring gene laccase-21-like Neighboring gene uncharacterized LOC107279264

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351178
    Names
    Os11g0696600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28496664..28499996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021446.1 → XP_025877231.1  uncharacterized protein LOC4351178

    RNA

    1. XR_003239397.1 RNA Sequence

    2. XR_003239396.1 RNA Sequence

    3. XR_001541577.2 RNA Sequence

    4. XR_001541575.2 RNA Sequence

    5. XR_001541578.2 RNA Sequence

    6. XR_003239394.1 RNA Sequence

    7. XR_001541573.2 RNA Sequence

    8. XR_003239395.1 RNA Sequence

    9. XR_001541576.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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